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Genome-wide epigenetic studies of retinal disease, risk factors, and related pathologies.

Journal: Journal of Experimental Neuroscience

Article Title: Epigenetic Mechanisms of the Aging Human Retina

doi: 10.4137/JEN.S25513

Figure Lengend Snippet: Genome-wide epigenetic studies of retinal disease, risk factors, and related pathologies.

Article Snippet: Ko et al, 2013 , Renal , Kidney fibrosis , Discovery: HELP-Nimblegen whole genome covering microarray; validation: bisulfite-Sequenom MassArray EpiTYPER; replication: Illumina Infinium HumanMethylation450K BeadChip , None , Discovery/validation: 12 hypertensive or diabetic chronic kidney disease, 14 controls; replication: 21 diabetic chronic kidney disease, 66 controls , Human kidney tubule epithelial cell tissue samples from healthy living transplants or surgical nephrectomies , Not provided , Discovery: 4751 DMRs/1535 genes; replication: 1061 genes , Cell adhesion, development , COLIVA1, DSCAM, DPT.

Techniques: Genome Wide, RNA Expression, Preserving, Methylation, Microarray, Immunohistochemistry, Western Blot, Activity Assay, Binding Assay, Methylated DNA Immunoprecipitation, Biomarker Discovery, DNA Methylation Assay, Cell Culture, Extraction, Methylation Sequencing, Transformation Assay, Sequencing, Methylated DNA Immunoprecipitation Sequencing, Phospho-proteomics, Glycoproteomics, Luciferase, Starch, In Vitro, Expressing, Transduction, Ubiquitin Proteomics, Clinical Proteomics, Membrane, Cell Differentiation, Control

Table of sequenom  massARRAY  primers.

Journal: Epigenetics

Article Title: The role of DNA methylation in human trophoblast differentiation

doi: 10.1080/15592294.2018.1549462

Figure Lengend Snippet: Table of sequenom massARRAY primers.

Article Snippet: Each number correlates to the CpG in the Sequenom amplicon presented in Figure 4 plots B-G. (b-g) Dot plots showing percentage methylation of CpGs in GATA2 (b), CPZ (c), CARD9 (d), GALNT6 (e), LOC100289580 (f), and C22orf31 (g) in SP, CTB, and EVT when analysed by Sequenom MassARRAY EpiTYPER Analysis.

Techniques: Sequencing